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Open Subsurface Data Universe Software
Platform
System
Dataset
Commits
e3034e71
Commit
e3034e71
authored
Jan 17, 2022
by
Aalekh Jain
Browse files
Merge branch 'master' into Code-Coverage
parents
cdddb4c1
9b3224c7
Pipeline
#86882
failed with stages
in 41 minutes and 51 seconds
Changes
11
Pipelines
5
Hide whitespace changes
Inline
Side-by-side
.gitlab-ci.yml
View file @
e3034e71
...
...
@@ -9,7 +9,7 @@ variables:
IBM_BUILD_SUBDIR
:
provider/dataset-ibm
IBM_INT_TEST_SUBDIR
:
testing/dataset-test-ibm
# --- osdu-gcp specific variables ---
# --- osdu-gcp specific variables ---
OSDU_GCP_SERVICE
:
dataset
OSDU_GCP_VENDOR
:
gcp
OSDU_GCP_APPLICATION_NAME
:
dataset
...
...
@@ -18,7 +18,7 @@ variables:
OSDU_GCP_TEST_SUBDIR
:
testing/$OSDU_GCP_SERVICE-test-$OSDU_GCP_VENDOR
OSDU_GCP_HELM_PACKAGE_CHARTS
:
"
devops/gcp/deploy
devops/gcp/configmap"
OSDU_GCP_HELM_CONFIG_SERVICE_VARS
:
"
--set
data.google_audiences=$GOOGLE_AUDIENCE
--set
data.redis_group_host=$REDIS_GROUP_HOST
--set
data.file_dms_bucket=$OSDU_GCP_FILE_DMS_BUCKET
--set
data.expiration_days=$OSDU_GCP_EXPIRATION_DAYS"
OSDU_GCP_HELM_DEPLOYMENT_SERVICE_VARS
:
"
--set
data.image=$CI_REGISTRY_IMAGE/osdu-gcp:$CI_COMMIT_SHORT_SHA
--set
data.serviceAccountName=
workload-identity-dataset
"
OSDU_GCP_HELM_DEPLOYMENT_SERVICE_VARS
:
"
--set
data.image=$CI_REGISTRY_IMAGE/osdu-gcp:$CI_COMMIT_SHORT_SHA
--set
data.serviceAccountName=
$OSDU_GCP_SERVICE-k8s
"
OSDU_GCP_HELM_CONFIG_SERVICE
:
dataset-config
OSDU_GCP_HELM_DEPLOYMENT_SERVICE
:
dataset-deploy
...
...
@@ -37,14 +37,14 @@ include:
-
project
:
"
osdu/platform/ci-cd-pipelines"
file
:
"
scanners/fossa-maven.yml"
-
project
:
'
osdu/platform/ci-cd-pipelines
'
file
:
'
cloud-providers/aws-global.yml
'
-
project
:
"
osdu/platform/ci-cd-pipelines
"
file
:
"
cloud-providers/aws-global.yml
"
-
project
:
'
osdu/platform/ci-cd-pipelines
'
file
:
'
cloud-providers/aws-maven.yml
'
-
project
:
"
osdu/platform/ci-cd-pipelines
"
file
:
"
cloud-providers/aws-maven.yml
"
-
project
:
'
osdu/platform/ci-cd-pipelines
'
file
:
'
cloud-providers/azure.yml
'
-
project
:
"
osdu/platform/ci-cd-pipelines
"
file
:
"
cloud-providers/azure.yml
"
-
project
:
"
osdu/platform/ci-cd-pipelines"
file
:
"
cloud-providers/ibm.yml"
...
...
@@ -52,9 +52,8 @@ include:
-
project
:
"
osdu/platform/ci-cd-pipelines"
file
:
"
scanners/gitlab-ultimate.yml"
-
project
:
'
osdu/platform/ci-cd-pipelines'
file
:
'
cloud-providers/osdu-gcp-gke.yml'
-
project
:
"
osdu/platform/ci-cd-pipelines"
file
:
"
cloud-providers/osdu-gcp-gke.yml"
# disable the eslint scanner
# I think this is being generated from the presence of an HTML file, but there
...
...
dataset-core/pom.xml
View file @
e3034e71
...
...
@@ -34,12 +34,8 @@
<java.version>
1.8
</java.version>
<maven.compiler.target>
1.8
</maven.compiler.target>
<maven.compiler.source>
1.8
</maven.compiler.source>
<springfox-version>
2.7.0
</springfox-version>
<tomcat_embed_core_version>
9.0.54
</tomcat_embed_core_version>
<log4j2.version>
2.17.0
</log4j2.version>
<!--
<springfox-version>2.9.2</springfox-version>
-->
</properties>
<dependencies>
...
...
@@ -176,18 +172,6 @@
<version>
3.0.0
</version>
<scope>
test
</scope>
</dependency>
<!-- swagger dependencies -->
<dependency>
<groupId>
io.springfox
</groupId>
<artifactId>
springfox-swagger2
</artifactId>
<version>
${springfox-version}
</version>
</dependency>
<dependency>
<groupId>
io.springfox
</groupId>
<artifactId>
springfox-swagger-ui
</artifactId>
<version>
${springfox-version}
</version>
</dependency>
</dependencies>
<build>
...
...
dataset-core/src/main/java/org/opengroup/osdu/dataset/swagger/SpringfoxSwaggerHostResolver.java
0 → 100644
View file @
e3034e71
package
org.opengroup.osdu.dataset.swagger
;
import
io.swagger.v3.oas.models.OpenAPI
;
import
io.swagger.v3.oas.models.servers.Server
;
import
org.springframework.core.Ordered
;
import
org.springframework.core.annotation.Order
;
import
org.springframework.stereotype.Component
;
import
springfox.documentation.oas.web.OpenApiTransformationContext
;
import
springfox.documentation.oas.web.WebMvcOpenApiTransformationFilter
;
import
springfox.documentation.spi.DocumentationType
;
import
javax.servlet.http.HttpServletRequest
;
@Component
@Order
(
Ordered
.
LOWEST_PRECEDENCE
)
public
class
SpringfoxSwaggerHostResolver
implements
WebMvcOpenApiTransformationFilter
{
@Override
public
boolean
supports
(
DocumentationType
delimiter
)
{
return
delimiter
==
DocumentationType
.
OAS_30
;
}
@Override
public
OpenAPI
transform
(
OpenApiTransformationContext
<
HttpServletRequest
>
context
)
{
OpenAPI
swagger
=
context
.
getSpecification
();
Server
server
=
swagger
.
getServers
().
get
(
0
);
if
(
server
.
getUrl
().
contains
(
":443"
))
{
// via the gateway
server
.
setUrl
(
server
.
getUrl
().
replace
(
":443"
,
""
));
}
return
swagger
;
}
}
\ No newline at end of file
dataset-core/src/main/java/org/opengroup/osdu/dataset/swagger/SwaggerDocumentationConfig.java
View file @
e3034e71
...
...
@@ -19,25 +19,28 @@ import org.opengroup.osdu.core.common.model.http.DpsHeaders;
import
org.springframework.context.annotation.Bean
;
import
org.springframework.context.annotation.Configuration
;
import
org.springframework.context.annotation.Profile
;
import
springfox.documentation.builders.ParameterBuilder
;
import
springfox.documentation.builders.PathSelectors
;
import
springfox.documentation.builders.RequestHandlerSelectors
;
import
springfox.documentation.schema.ModelRef
;
import
springfox.documentation.builders.RequestParameterBuilder
;
import
springfox.documentation.oas.annotations.EnableOpenApi
;
import
springfox.documentation.service.ApiKey
;
import
springfox.documentation.service.AuthorizationScope
;
import
springfox.documentation.service.ParameterType
;
import
springfox.documentation.service.RequestParameter
;
import
springfox.documentation.service.SecurityReference
;
import
springfox.documentation.spi.DocumentationType
;
import
springfox.documentation.spi.service.contexts.SecurityContext
;
import
springfox.documentation.spring.web.plugins.Docket
;
import
springfox.documentation.swagger2.annotations.EnableSwagger2
;
import
springfox.documentation.service.Parameter
;
import
java.util.ArrayList
;
import
java.util.Collections
;
import
java.util.List
;
@Configuration
@Enable
Swagger2
@Enable
OpenApi
@Profile
(
"!noswagger"
)
public
class
SwaggerDocumentationConfig
{
public
static
final
String
AUTHORIZATION_HEADER
=
"Authorization"
;
...
...
@@ -45,26 +48,23 @@ public class SwaggerDocumentationConfig {
@Bean
public
Docket
api
()
{
ParameterBuilder
builder
=
new
ParameterBuilder
();
List
<
Parameter
>
parameters
=
new
ArrayList
<>();
RequestParameterBuilder
builder
=
new
RequestParameterBuilder
();
List
<
RequestParameter
>
parameters
=
new
ArrayList
<>();
builder
.
name
(
DpsHeaders
.
DATA_PARTITION_ID
)
.
description
(
"tenant"
)
.
defaultValue
(
"common"
)
.
modelRef
(
new
ModelRef
(
"string"
))
.
parameterType
(
"header"
)
.
in
(
ParameterType
.
HEADER
)
.
required
(
true
)
.
build
();
parameters
.
add
(
builder
.
build
());
builder
.
name
(
"frame-of-reference"
)
.
description
(
"reference"
)
.
defaultValue
(
"none"
)
.
modelRef
(
new
ModelRef
(
"string"
))
.
parameterType
(
"header"
)
.
in
(
ParameterType
.
HEADER
)
.
required
(
true
)
.
build
();
parameters
.
add
(
builder
.
build
());
return
new
Docket
(
DocumentationType
.
SWAGGER_2
)
.
global
Operation
Parameters
(
parameters
)
return
new
Docket
(
DocumentationType
.
OAS_30
)
.
global
Request
Parameters
(
parameters
)
.
select
()
.
apis
(
RequestHandlerSelectors
.
basePackage
(
"org.opengroup.osdu.dataset.api"
))
.
build
()
...
...
@@ -73,13 +73,13 @@ public class SwaggerDocumentationConfig {
}
private
ApiKey
apiKey
()
{
return
new
ApiKey
(
"JWT"
,
AUTHORIZATION_HEADER
,
"header"
);
return
new
ApiKey
(
AUTHORIZATION_HEADER
,
AUTHORIZATION_HEADER
,
"header"
);
}
private
SecurityContext
securityContext
()
{
return
SecurityContext
.
builder
()
.
securityReferences
(
defaultAuth
())
.
forPaths
(
PathSelectors
.
regex
(
DEFAULT_INCLUDE_PATTERN
))
.
operationSelector
(
o
->
PathSelectors
.
regex
(
DEFAULT_INCLUDE_PATTERN
)
.
test
(
o
.
requestMappingPattern
())
)
.
build
();
}
...
...
@@ -89,6 +89,6 @@ public class SwaggerDocumentationConfig {
AuthorizationScope
[]
authorizationScopes
=
new
AuthorizationScope
[]{
authorizationScope
};
return
Collections
.
singletonList
(
new
SecurityReference
(
"JWT"
,
authorizationScopes
));
new
SecurityReference
(
AUTHORIZATION_HEADER
,
authorizationScopes
));
}
}
pom.xml
View file @
e3034e71
...
...
@@ -33,6 +33,7 @@
<commons-codec.version>
1.14
</commons-codec.version>
<nimbusds.version>
7.9
</nimbusds.version>
<log4j2.version>
2.17.0
</log4j2.version>
<springfox.version>
3.0.0
</springfox.version>
</properties>
<licenses>
...
...
@@ -111,6 +112,13 @@
<version>
1.18.8
</version>
<scope>
provided
</scope>
</dependency>
<!-- swagger dependency -->
<dependency>
<groupId>
io.springfox
</groupId>
<artifactId>
springfox-boot-starter
</artifactId>
<version>
${springfox.version}
</version>
</dependency>
</dependencies>
<profiles>
...
...
provider/dataset-azure/src/main/java/org/opengroup/osdu/dataset/provider/azure/security/AADSecurityConfig.java
View file @
e3034e71
...
...
@@ -42,11 +42,13 @@ public class AADSecurityConfig extends WebSecurityConfigurerAdapter {
.
authorizeRequests
()
.
antMatchers
(
"/"
,
"/index.html"
,
"/v2/api-docs"
,
"/v3/api-docs"
,
"/configuration/ui"
,
"/swagger-resources/**"
,
"/configuration/security"
,
"/swagger"
,
"/swagger-ui.html"
,
"/swagger-ui/**"
,
"/info"
,
"/webjars/**"
).
permitAll
()
.
anyRequest
().
authenticated
()
...
...
provider/dataset-gcp/src/main/java/org/opengroup/osdu/dataset/provider/gcp/config/GcpConfigProperties.java
View file @
e3034e71
...
...
@@ -31,9 +31,4 @@ public class GcpConfigProperties {
private
String
redisGroupHost
;
private
Integer
redisGroupPort
;
private
String
dmsApiBase
;
/**
* TODO: remove property and fix PgOsmConfigurationProperties.partitionPropertiesPrefix after
* Partition service migration to new approach (https://jiraeu.epam.com/browse/GONRG-3881)
*/
private
String
partitionPropertiesDelimiter
;
}
provider/dataset-gcp/src/main/java/org/opengroup/osdu/dataset/provider/gcp/mappers/osm/config/PgOsmConfigurationProperties.java
View file @
e3034e71
...
...
@@ -29,7 +29,7 @@ import org.springframework.context.annotation.Configuration;
@Getter
@Setter
public
class
PgOsmConfigurationProperties
{
private
String
partitionPropertiesPrefix
=
"osm
_
postgres"
;
private
String
partitionPropertiesPrefix
=
"osm
.
postgres"
;
private
Integer
maximumPoolSize
=
40
;
private
Integer
minimumIdle
=
0
;
private
Integer
idleTimeout
=
30000
;
...
...
provider/dataset-gcp/src/main/java/org/opengroup/osdu/dataset/provider/gcp/mappers/osm/config/PgTenantDestinationResolver.java
View file @
e3034e71
...
...
@@ -35,7 +35,6 @@ import org.opengroup.osdu.core.gcp.osm.model.Destination;
import
org.opengroup.osdu.core.gcp.osm.translate.TranslatorRuntimeException
;
import
org.opengroup.osdu.core.gcp.osm.translate.postgresql.PgDestinationResolution
;
import
org.opengroup.osdu.core.gcp.osm.translate.postgresql.PgDestinationResolver
;
import
org.opengroup.osdu.dataset.provider.gcp.config.GcpConfigProperties
;
import
org.springframework.boot.autoconfigure.condition.ConditionalOnProperty
;
import
org.springframework.boot.jdbc.DataSourceBuilder
;
import
org.springframework.stereotype.Component
;
...
...
@@ -46,13 +45,12 @@ import org.springframework.stereotype.Component;
@Slf4j
public
class
PgTenantDestinationResolver
implements
PgDestinationResolver
{
private
static
final
String
DATASOURCE
=
"datasource"
;
private
static
final
String
DATASOURCE
=
"
.
datasource
.
"
;
private
static
final
String
DRIVER_CLASS_NAME
=
"org.postgresql.Driver"
;
private
final
DpsHeaders
dpsHeaders
;
private
final
IPartitionFactory
partitionFactory
;
private
final
PgOsmConfigurationProperties
pgOsmConfigurationProperties
;
private
final
GcpConfigProperties
gcpConfigProperties
;
private
final
Map
<
String
,
DataSource
>
dataSourceCache
=
new
HashMap
<>();
@Override
...
...
@@ -78,13 +76,12 @@ public class PgTenantDestinationResolver implements PgDestinationResolver {
Map
<
String
,
Property
>
partitionProperties
=
partitionInfo
.
getProperties
();
String
prefix
=
pgOsmConfigurationProperties
.
getPartitionPropertiesPrefix
();
String
delimiter
=
gcpConfigProperties
.
getPartitionPropertiesDelimiter
();
String
url
=
getPartitionProperty
(
partitionId
,
partitionProperties
,
prefix
+
delimiter
+
DATASOURCE
+
delimiter
+
"url"
);
prefix
+
DATASOURCE
+
"url"
);
String
username
=
getPartitionProperty
(
partitionId
,
partitionProperties
,
prefix
+
delimiter
+
DATASOURCE
+
delimiter
+
"username"
);
prefix
+
DATASOURCE
+
"username"
);
String
password
=
getPartitionProperty
(
partitionId
,
partitionProperties
,
prefix
+
delimiter
+
DATASOURCE
+
delimiter
+
"password"
);
prefix
+
DATASOURCE
+
"password"
);
dataSource
=
DataSourceBuilder
.
create
()
.
driverClassName
(
DRIVER_CLASS_NAME
)
...
...
provider/dataset-gcp/src/main/resources/application.properties
View file @
e3034e71
...
...
@@ -56,5 +56,4 @@ ENTITLEMENTS_PATH=/api/entitlements/v2
ENTITLEMENTS_API
=
${ENTITLEMENTS_HOST}${ENTITLEMENTS_PATH}
osmDriver
=
datastore
obmDriver
=
gcs
PARTITION_PROPERTIES_DELIMITER
=
_
\ No newline at end of file
obmDriver
=
gcs
\ No newline at end of file
provider/dataset-ibm/pom.xml
View file @
e3034e71
...
...
@@ -36,9 +36,27 @@
<groupId>
org.apache.logging.log4j
</groupId>
<artifactId>
log4j-api
</artifactId>
</exclusion>
<exclusion>
<groupId>
io.netty
</groupId>
<artifactId>
netty-codec
</artifactId>
</exclusion>
<exclusion>
<groupId>
org.apache.lucene
</groupId>
<artifactId>
lucene-core
</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<dependency>
<groupId>
org.apache.lucene
</groupId>
<artifactId>
lucene-core
</artifactId>
<version>
8.10.0
</version>
</dependency>
<dependency>
<groupId>
io.netty
</groupId>
<artifactId>
netty-codec
</artifactId>
<version>
4.1.68.Final
</version>
</dependency>
<dependency>
<groupId>
org.apache.logging.log4j
</groupId>
<artifactId>
log4j-to-slf4j
</artifactId>
<version>
${log4j2.version}
</version>
...
...
@@ -73,9 +91,17 @@
<groupId>
org.apache.logging.log4j
</groupId>
<artifactId>
log4j-to-slf4j
</artifactId>
</exclusion>
</exclusions>
<exclusion>
<groupId>
org.apache.tomcat.embed
</groupId>
<artifactId>
tomcat-embed-core
</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>
org.apache.tomcat.embed
</groupId>
<artifactId>
tomcat-embed-core
</artifactId>
<version>
9.0.54
</version>
</dependency>
<!-- Third party Apache 2.0 license packages -->
<dependency>
...
...
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