Merge branch 'slb_code_push-wip' into 'master'

Slb code push

See merge request !3

LICENSE → LICENSE.TXT

+
                                  Apache License
                            Version 2.0, January 2004
                         http://www.apache.org/licenses/
@@ -173,29 +174,4 @@
       incurred by, or claims asserted against, such Contributor by reason
       of your accepting any such warranty or additional liability.
 
-   END OF TERMS AND CONDITIONS
-
-   APPENDIX: How to apply the Apache License to your work.
-
-      To apply the Apache License to your work, attach the following
-      boilerplate notice, with the fields enclosed by brackets "{}"
-      replaced with your own identifying information. (Don't include
-      the brackets!)  The text should be enclosed in the appropriate
-      comment syntax for the file format. We also recommend that a
-      file or class name and description of purpose be included on the
-      same "printed page" as the copyright notice for easier
-      identification within third-party archives.
-
-   Copyright 2020 Open Subsurface Data Universe Software / Platform / Domain Data Mgmt Services / Wellbore / Lib / Wellbore-cloud
-
-   Licensed under the Apache License, Version 2.0 (the "License");
-   you may not use this file except in compliance with the License.
-   You may obtain a copy of the License at
-
-       http://www.apache.org/licenses/LICENSE-2.0
-
-   Unless required by applicable law or agreed to in writing, software
-   distributed under the License is distributed on an "AS IS" BASIS,
-   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-   See the License for the specific language governing permissions and
-   limitations under the License.
+   END OF TERMS AND CONDITIONS
\ No newline at end of file

README.md

-## Introduction 
-Python package for osdu Azure cloud implementations.
+# Python package for OSDU Azure cloud implementation
 
-## Requirements and dependencies
-Requires Python 3.7+ and depends on osdu-core-lib-python
+## Introduction
 
-## Getting Started
+This project creates the OSDU Azure python package that implements intefrace `osdu-core-lib-python`.
 
-### from package
-install from package:
+## Prerequisites
 
-`pip install osdu-core-lib-python-azure`
+* Python 3.7.x
+* [Azure CLI](https://docs.microsoft.com/en-us/cli/azure/install-azure-cli?view=azure-cli-latest)
+* [Azurite npm](https://www.npmjs.com/package/azurite) or [Azurite docker image](https://hub.docker.com/_/microsoft-azure-storage-azurite) to run locally, [for more information](https://dev.azure.com/slb-des-ext-collaboration/open-data-ecosystem/_git/open-data-ecosystem.wiki?version=GBwikiMaster&path=%2FOSDU-(C)%2FWellbore-DMS%2FDesigns%2FAzure-Blob-Storage-Test-Design.md&_a=preview)
+* Follow the [Wellbore project set up steps](https://dev.azure.com/slb-des-ext-collaboration/open-data-ecosystem/_git/os-wellbore-ddms?path=%2FREADME.md&_a=preview&anchor=project-startup) to ensure the osdu dependencies can be installed successfully.
 
-### from sources
-install dependencies:
+## Dependencies
 
 `pip install -r requirements.txt`
 
+## **Required variables to run service**
+
+| name | value | description | sensitive? | source |
+| ---  | ---   | ---         | ---        | ---    |
+| KEYVAULT_URL | ex `https://foo-keyvault.vault.azure.net` | URL of shared KeyVault that holds application and partitions secrets | no | infrastructure deployment |
+| SERVICE_HOST_PARTITION | ex `http://partition.osdu/api/partition` | Partition Service endpoint | no | infrastructure deployment |
+| USE_PARTITION_SERVICE | `enabled`/`disabled` - defaults to `enabled` | Enabled when Partition Service is available in the environment/Disabled when not available and need to use fake Partition Service | no | infrastructure deployment |
 
 ## Tests
 
-### install dependencies
-unit tests uses [pytest](https://docs.pytest.org/en/stable/) framework. Other dependencies are 
-[pytest-asyncio](https://pypi.org/project/pytest-asyncio/) for testing asyncio code and 
-[pytest-cov](https://pypi.org/project/pytest-cov/) to produce coverage report.
+### Test Dependencies
+
+The tests use the [pytest](https://docs.pytest.org/en/stable/) framework. Other dependencies are [pytest-asyncio](https://pypi.org/project/pytest-asyncio/) for testing asyncio code and [pytest-cov](https://pypi.org/project/pytest-cov/) to produce coverage report.
 
+`pip install -r requirements_dev.txt`
 
-### run unit tests
+Install and run Azurite for local tests:
 
-install testing dependencies:
+Option 1: using npm:
 
-`pip install -r requirements_dev.txt`
+```bash
+# Install Azurite
+npm install -g azurite
+
+# Create azurite directory
+mkdir c:/azurite
+
+# Launch Azurite for Windows
+azurite --silent --location c:\azurite --debug c:\azurite\debug.log
+```
+
+Option 2: using docker
+
+```bash
+docker run -p 10000:10000 mcr.microsoft.com/azure-storage/azurite azurite-blob --blobHost 0.0.0.0
+```
+
+The tests run against an Azure storage emulator using Azurite. Azurite storage account and container are parameterized via environment.
+
+variables:
+
+| Variable | default value |
+| --- | --- |
+| TESTING_AZ_STORAGE_ACCOUNT | `http://127.0.0.1:10000/devstoreaccount1` |
+| TESTING_AZ_CREDENTIALS | `Eby8vdM02xNOcqFlqUwJPLlmEtlCDXJ1OUzFT50uSRZ6IFsuFq2UVErCz4I6tq/K1SZFPTOtr/KBHBeksoGMGw==` |
+| TESTING_AZ_CONTAINER | `wdms-osdu` |
+
+**Note: value for TESTING_AZ_CREDENTIALS is default value for Azurite, it's not a private key*
+
+### How to run locally using DefaultAzureCredential and the Azure CLI
 
-run all tests:
+The authentication relies on [DefaultAzureCredential](https://github.com/Azure/azure-sdk-for-python/tree/master/sdk/identity/azure-identity#defaultazurecredential). If a user has signed in via the Azure CLI `az login` command, DefaultAzureCredential will authenticate as that user. In order to have Read/Write access to the storage account and successfully run the tests, the user must be assigned the [Storage Blob Data Contributor](https://docs.microsoft.com/en-us/azure/role-based-access-control/built-in-roles#storage-blob-data-contributor) role.
 
-`python -m pytest ./tests`
+```bash
+az login
 
-run all tests and produce reports:
+# Set the subscription where the storage account is
+subscription=<subscription id>
 
-`python -m pytest --junit-xml=unit_tests_report.xml --cov=osdu_az --cov-report=html --cov-report=xml ./tests`
+# Set your default subscription
+az account set --subscription $subscription
+
+# Validate your default subscription is set correctly
+az account show
+```
+
+### Run Tests
+
+```bash
+python -m pytest ./tests
+
+# Run all tests and produce coverage reports
+python -m pytest --junit-xml=unit_tests_report.xml --cov=osdu_az --cov-report=html --cov-report=xml ./tests
+```
+
+### Generate and upload dev package
+
+Dev package can be generated and upload to the feed by manually triggering new pipeline from dev branch (not master) and
+check on the pipeline parameter 'generate dev package'.
+
+The version number is automatically setup following the format:
+
+```bash
+<CURRENT_VERSION>.dev<BUILD_NUMBER> # example: _0.0.15.dev20102119_
+ ```
+
+In order to select a dev package, command line or in requirement file must explicitly specify the full version:
+
+```bash
+pip install osdu-core-lib-python-azure==0.0.15.dev20102116
+```
+
+or use the option `--pre` on `pip install` command (see [pip install documentation](https://pip.pypa.io/en/stable/reference/pip_install/#install-pre)).
+Otherwise pip only finds stable versions and ignore any pre-release and development versions.
 
 ## License
+
 Apache version 2.0 (see LICENSE.TXT)
 
-## Contribute
-Note: version number must be updated manually for now. Increment by one the version patch part in file osdu_az/\_\_init\_\_.py
+## Additional Notes
+
+* The version number must be updated manually for now. Increment by one the version patch part in file `osdu_az/__init__.py`.

osdu_az/__init__.py

-__version__ = '0.0.2'
+__version__ = '0.1.5'

osdu_az/conf.py

+def _from_env(key, default=None):
+    import os
+    result = os.environ.get(key, default)
+    # Suppress validation of required env vars on module loading.
+    # os-wellbore-dms is importing azure dependencies in gcp deployments.
+    # assert result, "Failed to get {} env variable".format(key)
+    return result
+
+
+keyvault_url = _from_env('KEYVAULT_URL')
+partition_api_url = _from_env('SERVICE_HOST_PARTITION')

osdu_az/exceptions/data_access_error.py

+
+class DataAccessError(Exception):
+    def __init__(self, message: str, status_code: int = None):
+        super().__init__(message)
+        self.message = message
+        self.status_code = status_code

osdu_az/identity/az_identity.py

+from azure.identity import DefaultAzureCredential
+from azure.keyvault.secrets import SecretClient
+
+from osdu_az import conf
+
+
+class AzureIdentity:
+    default_credential = None
+    default_scope = ''
+
+    @staticmethod
+    def get_default_credential():
+        if not AzureIdentity.default_credential:
+            AzureIdentity.default_credential = DefaultAzureCredential()
+        return AzureIdentity.default_credential
+
+    @staticmethod
+    def get_access_token():
+        credential = AzureIdentity.get_default_credential()
+        return credential.get_token(AzureIdentity.get_scope()).token
+
+    @staticmethod
+    def get_scope():
+        if not AzureIdentity.default_scope:
+            AzureIdentity.default_scope = AzureIdentity.get_resource_id()
+        return AzureIdentity.default_scope
+
+    @staticmethod
+    def get_resource_id() -> str:
+        secret_client = SecretClient(conf.keyvault_url, AzureIdentity.get_default_credential())
+        secret = secret_client.get_secret('aad-client-id')
+        return secret.value

osdu_az/opendes/fake_partition_client.py

+from typing import Optional
+
+from osdu_az.partition.partition_info import PartitionInfo
+
+fake_partition_properties = \
+    {
+        'storage-account-name': {
+            'sensitive': True,
+            'value': 'opendes-storage'
+        }
+    }
+
+default_partition_name = 'opendes'
+
+
+class FakePartitionClient:
+
+    @staticmethod
+    async def get_partition(data_partition_id: str) -> Optional[PartitionInfo]:
+        if data_partition_id == default_partition_name:
+            return PartitionInfo(fake_partition_properties)

osdu_az/opendes/partition_client.py

+from typing import Optional
+
+import aiohttp
+
+from osdu_az import conf
+from osdu_az.exceptions.data_access_error import DataAccessError
+from osdu_az.identity.az_identity import AzureIdentity
+from osdu_az.partition.partition_info import PartitionInfo
+
+error_message = 'Failed to retrieve data partition'
+
+
+class PartitionClient:
+
+    @staticmethod
+    def partition_endpoint() -> str:
+        return conf.partition_api_url + '/v1/partitions/'
+
+    @staticmethod
+    async def get_partition(data_partition_id: str) -> Optional[PartitionInfo]:
+        access_token = AzureIdentity.get_access_token()
+
+        headers = {
+            'authorization': f'Bearer {access_token}'
+        }
+
+        async with aiohttp.ClientSession(headers=headers) as session:
+            async with session.get(PartitionClient.partition_endpoint() + data_partition_id) as response:
+                if response.status == 200:
+                    partition_properties = await response.json()
+                    return PartitionInfo(partition_properties)
+
+                raise DataAccessError(message=f'{error_message} {data_partition_id}. {response.reason}.',
+                                      status_code=response.status)

osdu_az/partition/partition_info.py

+from typing import Optional
+
+from azure.keyvault.secrets import SecretClient
+
+from osdu_az import conf
+from osdu_az.identity.az_identity import AzureIdentity
+
+
+class PartitionInfo():
+    def __init__(self, partition_properties: dict = None):
+        self._partition_properties = partition_properties
+        self._secret_client = None
+
+    def get_value(self, property_name: str) -> Optional[str]:
+        partition_property = self._partition_properties.get(property_name)
+        if not partition_property:
+            return None
+
+        if not partition_property.get('sensitive'):
+            return partition_property['value']
+
+        secret = self._get_secret(partition_property['value'])
+        return secret.value
+
+    def _get_secret(self, key: str):
+        return self._get_secret_client().get_secret(key)
+
+    def _get_secret_client(self):
+        if not self._secret_client:
+            self._secret_client = SecretClient(conf.keyvault_url, AzureIdentity.get_default_credential())
+        return self._secret_client
+

osdu_az/partition/partition_service.py

+from os import environ
+
+from osdu_az.opendes.fake_partition_client import FakePartitionClient
+from osdu_az.opendes.partition_client import PartitionClient
+from osdu_az.partition.partition_info import PartitionInfo
+from osdu_az.partition.partitions_cache import PartitionsCache
+
+# KNOWN CORE PARTITION PROPERTIES
+COSMOS_ENDPOINT = 'cosmos-endpoint'
+COSMOS_CONNECTION = 'cosmos-connection'
+ELASTIC_USERNAME = 'elastic-username'
+ELASTIC_ENDPOINT = 'elastic-endpoint'
+SB_CONNECTION = 'sb-connection'
+COSMOS_PRIMARY_KEY = 'cosmos-primary-key'
+COMPLIANCE_RULESET = 'compliance-ruleset'
+STORAGE_ACCOUNT_NAME = 'storage-account-name'
+ELASTIC_PASSWORD = 'elastic-password'
+STORAGE_ACCOUNT_KEY = 'storage-account-key'
+SB_NAMESPACE = 'sb-namespace'
+PARTITION_ID = 'id'
+
+
+class PartitionService:
+    partition_client = None
+    scope = ''
+
+    @staticmethod
+    async def get_partition(data_partition_id: str) -> PartitionInfo:
+        partition_info = PartitionsCache.get(data_partition_id)
+        if not partition_info:
+            partition_info = await PartitionService._partition_client().get_partition(data_partition_id)
+            if partition_info:
+                PartitionsCache.set(data_partition_id, partition_info)
+        return partition_info
+
+    @staticmethod
+    async def get_storage_account_name(data_partition_id: str):
+        partition_info = await PartitionService.get_partition(data_partition_id)
+        if partition_info:
+            return partition_info.get_value(STORAGE_ACCOUNT_NAME)
+
+    @staticmethod
+    def _partition_client():
+        if not PartitionService.partition_client:
+            PartitionService._initialize_partition_client()
+        return PartitionService.partition_client
+
+    @staticmethod
+    def _initialize_partition_client():
+        if environ.get('USE_PARTITION_SERVICE', default='enabled').lower() == 'enabled':
+            PartitionService.partition_client = PartitionClient()
+        else:
+            PartitionService.partition_client = FakePartitionClient()

osdu_az/partition/partitions_cache.py

+from cachetools import TTLCache
+
+
+class PartitionsCache:
+    partitions_cache = TTLCache(maxsize=100, ttl=300)
+
+    @staticmethod
+    def get(data_partition_id: str):
+        return PartitionsCache.partitions_cache.get(data_partition_id)
+
+    @staticmethod
+    def set(data_partition_id: str, partition_info):
+        PartitionsCache.partitions_cache[data_partition_id] = partition_info
+
+    @staticmethod
+    def clear():
+        PartitionsCache.partitions_cache.clear()

osdu_az/storage/blob_storage_az.py

 from osdu.core.api.storage.blob_storage_base import BlobStorageBase
 from osdu.core.api.storage.blob import Blob
 from typing import Optional, List, Any
+from azure.storage.blob.aio import BlobServiceClient
+from azure.identity.aio import DefaultAzureCredential
+from osdu.core.api.storage.tenant import Tenant
+
+from osdu_az.partition.partition_service import PartitionService
 
 
 class AzureAioBlobStorage(BlobStorageBase):
 
-    async def list_objects(self, project: str, container: str,
-                           *, auth: Optional = None, prefix: str = '', page_token: Optional[str] = None,
+    def _build_url(self, storage_account: str):
+        return f'https://{storage_account}.blob.core.windows.net'
+
+    def _get_credentials(self):
+        return DefaultAzureCredential(exclude_shared_token_cache_credential=True,
+                                      exclude_visual_studio_code_credential=True,
+                                      exclude_environment_credential=True)
+
+    async def _close_credentials(self, credential):
+        await credential.close()
+
+    async def _get_storage_account_name(self, data_partition_id: str):
+        return await PartitionService.get_storage_account_name(data_partition_id)
+
+    async def list_objects(self, tenant: Tenant,
+                           *args, auth: Optional = None, prefix: str = '', page_token: Optional[str] = None,
                            max_result: Optional[int] = None, timeout: int = 10, **kwargs) -> List[str]:
         """
-            list all object within a bucket
+            list all object within a container
             :param auth: auth obj to perform the operation
-            :param project: project or account
-            :param container: container or bucket name
+            :param tenant: tenant info
             :param prefix: Filter results to objects whose names begin with this prefix
             :param page_token: A previously-returned page token representing part of the larger set of results to view.
             :param max_result: Maximum number of items to return.
             :param timeout: timeout
             :param kwargs:
             :return: list of blob names
-            """
+        """
+
         raise NotImplementedError('Azure blob storage implementation, "list_objects" not implemented')
 
-    async def delete(self, project: str, container: str, object_name: str,
-                     *, auth: Optional = None, timeout: int = 10, **kwargs):
+    async def delete(self, tenant: Tenant, object_name: str,
+                     *args, auth: Optional = None, timeout: int = 10, **kwargs):
         """
             delete an object
             :param auth: auth obj to perform the operation
-            :param project: project or account
-            :param container: container or bucket name
+            :param tenant: tenant info
             :param object_name:
             :param timeout:
             :param kwargs:
             :return:
-            """
+        """
         raise NotImplementedError('Azure blob storage implementation, "delete" not implemented')
 
-    async def download(self, project: str, container: str, object_name: str,
-                       *, auth: Optional = None, timeout: int = 10, **kwargs) -> bytes:
+    async def download(self, tenant: Tenant, object_name: str,
+                       *args, auth: Optional = None, timeout: int = 10, **kwargs) -> bytes:
         """
             download blob data
             :param auth: auth obj to perform the operation
-            :param project: project or account
-            :param container: container or bucket name
+            :param tenant: tenant info
             :param object_name:
             :param timeout:
             :param kwargs:
             :return:
-            """
-        raise NotImplementedError('Azure blob storage implementation, "download" not implemented')
+        """
+        storage_account = await self._get_storage_account_name(tenant.data_partition_id)
+        container = tenant.bucket_name
 
-    async def download_metadata(self, project: str, container: str, object_name: str,
-                                *, auth: Optional = None, timeout: int = 10, **kwargs) -> Blob:
+        cred = self._get_credentials()
+        account_url = self._build_url(storage_account)
+        try:
+            blob_service_client = BlobServiceClient(account_url=account_url, credential=cred)
+            async with blob_service_client:
+                container_client = blob_service_client.get_container_client(container)
+                blob_client = container_client.get_blob_client(object_name)
+                data = await blob_client.download_blob()
+                return await data.readall()
+        finally:
+            await self._close_credentials(cred)
+
+    # not for now, parquet only
+    async def download_metadata(self, tenant: Tenant, object_name: str,
+                                *args, auth: Optional = None, timeout: int = 10, **kwargs) -> Blob:
         """
             download blob data
             :param auth: auth obj to perform the operation
-            :param project: project or account
-            :param container: container or bucket name
+            :param tenant: tenant info
             :param object_name:
             :param timeout:
             :param kwargs:
             :return: blob
-            """
+        """
         raise NotImplementedError('Azure blob storage implementation, "download_metadata" not implemented')
 
-    async def upload(self, project: str, container: str, object_name: str, file_data: Any,
-                     *, auth: Optional = None, content_type: str = None, metadata: dict = None,
+    async def upload(self, tenant: Tenant, object_name: str, file_data: Any,
+                     *args, auth: Optional = None, content_type: str = None, metadata: dict = None,
                      timeout: int = 30, **kwargs):
-        raise NotImplementedError('Azure blob storage implementation, "upload" not implemented')
+        """
+            upload blob data
+            :param tenant: tenant info
+            :param object_name: maps to file name
+            :param file_data: Any, *,
+            :param auth: Optional = None,
+            :param content_type: str = None,
+            :param metadata: dict = None,
+            :param timeout: int = 30, **kwargs
+            :param return: blob id
+        """
+        storage_account = await self._get_storage_account_name(tenant.data_partition_id)
+        container = tenant.bucket_name
+
+        cred = self._get_credentials()
+        account_url = self._build_url(storage_account)
+        try:
+            blob_service_client = BlobServiceClient(account_url=account_url, credential=cred)
+            async with blob_service_client:
+                container_client = blob_service_client.get_container_client(container)
+                blob_client = container_client.get_blob_client(object_name)
+                data = await blob_client.upload_blob(file_data, overwrite=True, metadata=metadata)
+                return data
+        finally:
+            await self._close_credentials(cred)

requirements.txt

 # osdu core lib main python
-# osdu-core-lib-python>=0.3.0, <0.4
+# osdu-core-lib-python>=0.4.0, <0.5
+azure.storage.blob>=12.4
+azure.identity
+azure-keyvault
+cachetools

requirements_dev.txt

 pytest>=3
 pytest-asyncio
 pytest-cov
+mock
+azure.core
\ No newline at end of file

tests/conftest.py

+from azure.storage.blob import BlobServiceClient
+from os import environ
+
+
+class Config:
+    storage_account = environ.get('TESTING_AZ_STORAGE_ACCOUNT', 'http://127.0.0.1:10000/devstoreaccount1')
+    storage_account_name = environ.get('STORAGE_ACCOUNT_NAME', 'devstoreaccount1')
+    credentials = environ.get('TESTING_AZ_CREDENTIALS', 'Eby8vdM02xNOcqFlqUwJPLlmEtlCDXJ1OUzFT50uSRZ6IFsuFq2UVErCz4I6tq/K1SZFPTOtr/KBHBeksoGMGw==')
+    container = environ.get('TESTING_AZ_CONTAINER', 'wdms-osdu')
+    environ.setdefault('KEYVAULT_URL', 'invalid-keyvault-name')
+    environ.setdefault('SERVICE_HOST_PARTITION', 'invalid-partition-service-name')
+
+def pytest_configure(config):
+    blob_service_client = BlobServiceClient(account_url=Config.storage_account, credential= Config.credentials)
+    try:
+        blob_service_client.create_container(Config.container)
+    except Exception as ex:
+        print(ex)
\ No newline at end of file

tests/partition/fake/test_fake_partition_service.py

+import pytest
+from azure.keyvault.secrets import KeyVaultSecret
+
+from mock import patch, Mock
+
+from osdu_az.partition.partition_info import PartitionInfo
+from osdu_az.partition.partition_service import PartitionService
+